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Home » Recipes » Cakes & Cupcakes

May 13, 2026

Small Batch Lemon Poppy Seed Cupcakes

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Lemon poppy seed is one of my favorite flavor combos of all time, and these small batch lemon poppy seed cupcakes are unbelievably delicious! They are super fluffy, full of citrus flavor (no extract needed!), and the poppy seeds add a nice nutty crunch. The recipe comes together in about 30 minutes, and you'll end up with just 6 servings!

A white platter of small batch lemon poppy seed cupcakes next to lemon slices on a white backdrop.

I just got back from Guatemala, where we had the most incredible mangoes, papayas, and watermelons. And then I came back to a big rainstorm and the most flavorless berries I've ever eaten in my life. 🥲 Summer cannot come soon enough.

Luckily, in this weird in-between time, we have lemons! I know citrus season is kind of over, but lemon is year-round for me. And since Mother's Day was this last weekend, I wanted to make my mom a dessert using one of her favorite things: lemon poppy seed!

I've been making a version of these cupcakes since I was in pastry school, but I pared down the recipe so it makes just 6 servings. The cupcakes have a big pop of citrus, but you don't need extracts or any artificial ingredients. Just a few fresh lemons!

Like my small batch vanilla cupcakes, these come together super quickly and easily. All you need is a hand mixer! Top the cupcakes with my small batch cream cheese frosting or even this fluffy vanilla buttercream. Sooo good!

Bake this recipe

A silver bowl of butter and lemon sugar on a tan counter.
Start by mixing the lemon zest & sugar. Then, add the softened unsalted butter.
A silver bowl of creamed butter and sugar, vanilla, and an egg on a tan counter.
Cream the butter & lemon sugar for 3-4 minutes. Add the egg & vanilla extract.
A silver bowl of flour and poppy seeds on a beige table.
Mix in the all-purpose flour, baking powder, Kosher salt, and poppy seeds.
A silver bowl of batter and milk for small batch lemon poppy seed cupcakes.
Add the whole milk, lemon juice, & oil just until there are no more streaks of flour.
A hand using a scoop to divide batter for small batch lemon poppy seed cupcakes in a cupcake pan.
Divide the batter between 6 cupcake liners. The liners will be about ¾ full.
A pan of small batch lemon poppy seed cupcakes on a beige counter.
Bake the cupcakes at 350°F (177°C) for 15-17 minutes. Cool completely.

Whether you use a hand mixer or a stand mixer, make sure you don't over-mix the batter! Adding too much air will make the cupcakes sink in the center. Mix just until there are no more streaks of flour or milk.

Lemon sugar

A white bowl of lemon sugar.

I don't mind lemon extract, but I don't like storing a bunch of random flavorings in my pantry lol. So I try to use natural flavors as much as possible! To make these cakes super lemony, we're going to make lemon sugar. (Don't worry, it's super easy.)

To make it, just rub the granulated sugar and lemon zest together until the lemon zest releases its oils. Don't overdo it, though, or the zest will get bitter!

A cupcake with a bite taken out of it on a white platter of small batch lemon poppy seed cupcakes with a white background.


When it comes to small batch baking, I always recommend using a scale to measure the ingredients. Just a small amount of flour can make or break an entire recipe. But if you don't have a scale, use the fluff, spoon, & level method to measure flour, cocoa, & other dry ingredients. Here is a whole guide on how I measure ingredients for small batch baking!


If you try this recipe, I would love if you left a star rating and review. I read every comment and love hearing what you think about my recipes. Thanks so much for supporting Midnight Bake Club!

Easy Small Batch Lemon Poppy Seed Cupcakes

These small batch lemon poppy seed cupcakes are one of my favorite desserts of all time! I've been making this recipe for well over a decade, and it's always a hit. The cupcakes are easy to make, super citrusy, a little nutty, and you get just 6 gorgeous servings. You don't even need extracts, just fresh lemons!
Print Recipe Pin Recipe
Prep Time 10 minutes mins
Cook Time 20 minutes mins
Total Time 30 minutes mins
Course Dessert
Cuisine American
Servings 6 cupcakes

Equipment

  • Hand mixer
  • Standard cupcake pan
  • Paper cupcake liners

Ingredients
  

  • 80 grams all-purpose flour (⅔ cup)
  • ¾ teaspoon baking powder
  • ⅛ teaspoon Kosher salt I use Diamond
  • 10 grams poppy seeds (1 Tablespoon)
  • 80 milliliters whole milk (⅓ cup)
  • 2 teaspoons fresh lemon juice
  • 2 teaspoons neutral oil I use avocado oil
  • 75 grams granulated sugar (6 Tablespoons)
  • 3 grams lemon zest (1 Tablespoon, lightly packed)
  • 60 grams unsalted butter softened (¼ cup)
  • 1 large egg room temperature
  • 1 teaspoon pure vanilla extract

Instructions
 

  • Preheat the oven to 350°F (177°C). Line a standard cupcake pan with 6 paper cupcake liners.
  • Whisk the all-purpose flour, baking powder, Kosher salt, and poppy seeds together in a small bowl. Then, combine the whole milk, lemon juice, and oil in a small measuring cup. (It may curdle, but that's ok!)
  • Add the granulated sugar and lemon zest to a medium mixing bowl. Using clean fingers, rub the sugar and lemon zest together until the lemon zest releases its oils and it smells very fragrant, about 1 minute.
  • Add the softened unsalted butter to the lemon sugar. Using a stand mixer or hand mixer, cream the butter and sugar until it's very light and fluffy, 3-4 minutes. Scrape down the sides of the bowl with a rubber spatula halfway through to ensure everything is well-mixed. Then, add the egg and vanilla extract until smooth.
  • Add the flour mixture to the wet ingredients. Mix until the batter is about 75% combined. Then, add the whole milk mixture. Stir just until the batter comes together. Don't over-mix or the cupcakes will turn out dense and dry.
  • Using a cupcake scoop, evenly divide the batter between the cupcake liners. They should be about ¾ of the way full.
  • Bake the cupcakes for 15-17 minutes, or until an inserted toothpick has just a few moist crumbs. Let the cupcakes cool in the pan for 5 minutes. Then, transfer the cupcakes to a wire rack to cool completely. Frost and decorate as desired. Enjoy!

Notes

With small batch baking, it's important to weight the ingredients with a scale instead of measuring cups. Even just a little extra flour can completely derail the recipe. But, if you don't have a scale, here's how to measure the flour. First, fluff it with a whisk. Spoon the fluffed flour into the measuring spoon and level it off without packing it in.
I used Diamond Kosher salt when I was testing this recipe. If you use Morton's, halve the amount of salt.
For high-altitude (around 4,500 feet), use half the amount of baking powder.
Whether you use a hand mixer or a stand mixer, make sure you don't over-mix the batter! Adding too much air will make the cupcakes sink in the center. Mix just until there are no more streaks of flour or milk.
Try topping the cupcakes with my small batch vanilla buttercream or this small batch cream cheese frosting.

Nutrition

Serving: 1cupcakeCalories: 213kcalCarbohydrates: 24gProtein: 3gFat: 12gSaturated Fat: 6gCholesterol: 54mgSodium: 121mgPotassium: 65mgFiber: 1gSugar: 13gVitamin C: 0mgCalcium: 56mgIron: 1mg
Keyword 6 servings, cake, cupcakes, lemon, poppy seed
Tried this recipe?Let us know how it was!

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Hi, I'm Sara!

I am a trained pastry chef who loves listening to music & baking late into the night. Here, I'm sharing my go-to small batch baking recipes for any late night craving.

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